STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4SJW0_9ROSIUncharacterized protein. (87 aa)    
Predicted Functional Partners:
V4WIK6_9ROSI
WD_REPEATS_REGION domain-containing protein.
   
 0.959
V4T620_9ROSI
WD_REPEATS_REGION domain-containing protein.
   
 0.956
V4U073_9ROSI
WD_REPEATS_REGION domain-containing protein.
   
 0.951
V4RRZ7_9ROSI
Uncharacterized protein.
   
 0.947
V4UHS9_9ROSI
Uncharacterized protein.
   
 0.940
V4SQM1_9ROSI
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.938
V4STD8_9ROSI
Uncharacterized protein.
   
 
 0.936
V4SIX1_9ROSI
NUC153 domain-containing protein.
   
 
 0.935
V4SR80_9ROSI
Uncharacterized protein.
   
 
 0.934
V4U0Q3_9ROSI
WD_REPEATS_REGION domain-containing protein.
   
 
 0.934
Your Current Organism:
Citrus clementina
NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine
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