STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4UC04_9ROSIPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. (274 aa)    
Predicted Functional Partners:
V4UT28_9ROSI
Uncharacterized protein.
  
 
 0.950
V4SJP9_9ROSI
Ribosomal_TL5_C domain-containing protein.
   
 
 0.916
V4RUQ3_9ROSI
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.905
V4UTM1_9ROSI
Uncharacterized protein.
  
   0.902
V4UL75_9ROSI
Uncharacterized protein.
   
   0.901
V4SM89_9ROSI
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
   0.899
V4TBM3_9ROSI
Uncharacterized protein.
   
   0.888
V4V6Z9_9ROSI
Uncharacterized protein.
  
 
 0.866
V4W8N2_9ROSI
Uncharacterized protein.
  
 
 0.866
V4TF33_9ROSI
Uncharacterized protein.
  
   0.855
Your Current Organism:
Citrus clementina
NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine
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