V4UCJ5_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4UCJ5_9ROSI

GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (221 aa)

Predicted Functional Partners:

V4SH29_9ROSI

0.986

V4SFC5_9ROSI

0.983

V4T804_9ROSI

0.983

V4TAI1_9ROSI

0.962

V4U1H4_9ROSI

0.962

V4SI69_9ROSI

0.954

V4SMN7_9ROSI

0.954

V4SN27_9ROSI

0.954

V4S5Y1_9ROSI

0.946

V4RTC0_9ROSI

0.942

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RTC0_9ROSI	V4UCJ5_9ROSI	V4RTC0	V4UCJ5	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.942
V4S5Y1_9ROSI	V4SFC5_9ROSI	V4S5Y1	V4SFC5	Importin N-terminal domain-containing protein.	Xpo1 domain-containing protein.	0.474
V4S5Y1_9ROSI	V4SH29_9ROSI	V4S5Y1	V4SH29	Importin N-terminal domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.478
V4S5Y1_9ROSI	V4SI69_9ROSI	V4S5Y1	V4SI69	Importin N-terminal domain-containing protein.	GRIP domain-containing protein.	0.402
V4S5Y1_9ROSI	V4SMN7_9ROSI	V4S5Y1	V4SMN7	Importin N-terminal domain-containing protein.	RanBD1 domain-containing protein.	0.402
V4S5Y1_9ROSI	V4SN27_9ROSI	V4S5Y1	V4SN27	Importin N-terminal domain-containing protein.	RanBD1 domain-containing protein.	0.402
V4S5Y1_9ROSI	V4T804_9ROSI	V4S5Y1	V4T804	Importin N-terminal domain-containing protein.	CRM1_C domain-containing protein.	0.474
V4S5Y1_9ROSI	V4UCJ5_9ROSI	V4S5Y1	V4UCJ5	Importin N-terminal domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.946
V4SFC5_9ROSI	V4S5Y1_9ROSI	V4SFC5	V4S5Y1	Xpo1 domain-containing protein.	Importin N-terminal domain-containing protein.	0.474
V4SFC5_9ROSI	V4SI69_9ROSI	V4SFC5	V4SI69	Xpo1 domain-containing protein.	GRIP domain-containing protein.	0.663
V4SFC5_9ROSI	V4SMN7_9ROSI	V4SFC5	V4SMN7	Xpo1 domain-containing protein.	RanBD1 domain-containing protein.	0.663
V4SFC5_9ROSI	V4SN27_9ROSI	V4SFC5	V4SN27	Xpo1 domain-containing protein.	RanBD1 domain-containing protein.	0.663
V4SFC5_9ROSI	V4TAI1_9ROSI	V4SFC5	V4TAI1	Xpo1 domain-containing protein.	WPP domain-containing protein.	0.574
V4SFC5_9ROSI	V4U1H4_9ROSI	V4SFC5	V4U1H4	Xpo1 domain-containing protein.	WPP domain-containing protein.	0.574
V4SFC5_9ROSI	V4UCJ5_9ROSI	V4SFC5	V4UCJ5	Xpo1 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.983
V4SH29_9ROSI	V4S5Y1_9ROSI	V4SH29	V4S5Y1	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	Importin N-terminal domain-containing protein.	0.478
V4SH29_9ROSI	V4UCJ5_9ROSI	V4SH29	V4UCJ5	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.986
V4SI69_9ROSI	V4S5Y1_9ROSI	V4SI69	V4S5Y1	GRIP domain-containing protein.	Importin N-terminal domain-containing protein.	0.402
V4SI69_9ROSI	V4SFC5_9ROSI	V4SI69	V4SFC5	GRIP domain-containing protein.	Xpo1 domain-containing protein.	0.663
V4SI69_9ROSI	V4T804_9ROSI	V4SI69	V4T804	GRIP domain-containing protein.	CRM1_C domain-containing protein.	0.663

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About