STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4UJ09_9ROSIRING-type E3 ubiquitin transferase. (450 aa)    
Predicted Functional Partners:
V4ST42_9ROSI
HECT domain-containing protein.
      
 0.474
V4U9A0_9ROSI
HECT domain-containing protein.
      
 0.456
V4UB09_9ROSI
Uncharacterized protein.
  
     0.435
V4TEZ7_9ROSI
BHLH domain-containing protein.
  
     0.427
V4RJB4_9ROSI
Uncharacterized protein.
  
     0.426
V4VLF0_9ROSI
AAI domain-containing protein.
  
     0.423
V4UCV0_9ROSI
Uncharacterized protein.
  
     0.417
V4RS29_9ROSI
LEA_2 domain-containing protein.
  
     0.414
V4VNB6_9ROSI
Uncharacterized protein.
  
     0.414
V4W574_9ROSI
Gnk2-homologous domain-containing protein.
  
     0.414
Your Current Organism:
Citrus clementina
NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.