V4VEZ5_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4VEZ5_9ROSI

Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (583 aa)

Predicted Functional Partners:

V4UIW6_9ROSI

0.922

V4SGT2_9ROSI

0.905

V4VZ80_9ROSI

0.903

V4TTA0_9ROSI

0.869

V4U3T8_9ROSI

0.829

V4U638_9ROSI

0.801

V4W5W8_9ROSI

0.801

V4S678_9ROSI

0.767

V4SBF3_9ROSI

0.767

V4TJS3_9ROSI

0.767

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S678_9ROSI	V4SBF3_9ROSI	V4S678	V4SBF3	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.900
V4S678_9ROSI	V4SGT2_9ROSI	V4S678	V4SGT2	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.767
V4S678_9ROSI	V4TJS3_9ROSI	V4S678	V4TJS3	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.905
V4S678_9ROSI	V4TTA0_9ROSI	V4S678	V4TTA0	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.400
V4S678_9ROSI	V4U3T8_9ROSI	V4S678	V4U3T8	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4S678_9ROSI	V4U638_9ROSI	V4S678	V4U638	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4S678_9ROSI	V4UIW6_9ROSI	V4S678	V4UIW6	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4S678_9ROSI	V4VEZ5_9ROSI	V4S678	V4VEZ5	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.767
V4S678_9ROSI	V4VZ80_9ROSI	V4S678	V4VZ80	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.773
V4S678_9ROSI	V4W5W8_9ROSI	V4S678	V4W5W8	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4SBF3_9ROSI	V4S678_9ROSI	V4SBF3	V4S678	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.900
V4SBF3_9ROSI	V4SGT2_9ROSI	V4SBF3	V4SGT2	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.767
V4SBF3_9ROSI	V4TJS3_9ROSI	V4SBF3	V4TJS3	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.905
V4SBF3_9ROSI	V4TTA0_9ROSI	V4SBF3	V4TTA0	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.400
V4SBF3_9ROSI	V4U3T8_9ROSI	V4SBF3	V4U3T8	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4SBF3_9ROSI	V4U638_9ROSI	V4SBF3	V4U638	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4SBF3_9ROSI	V4UIW6_9ROSI	V4SBF3	V4UIW6	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566
V4SBF3_9ROSI	V4VEZ5_9ROSI	V4SBF3	V4VEZ5	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.767
V4SBF3_9ROSI	V4VZ80_9ROSI	V4SBF3	V4VZ80	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.773
V4SBF3_9ROSI	V4W5W8_9ROSI	V4SBF3	V4W5W8	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.566