V4VHY5_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4VHY5_9ROSI

Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family. (395 aa)

Predicted Functional Partners:

V4TJW5_9ROSI

0.963

V4SSF2_9ROSI

0.950

V4TB32_9ROSI

0.945

V4U0P4_9ROSI

0.945

V4UJT1_9ROSI

0.945

V4S5F8_9ROSI

0.932

V4SJ37_9ROSI

0.932

V4T463_9ROSI

0.932

V4UCQ2_9ROSI

0.932

V4WI54_9ROSI

0.924

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S5F8_9ROSI	V4SSF2_9ROSI	V4S5F8	V4SSF2	EXPERA domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.945
V4S5F8_9ROSI	V4VHY5_9ROSI	V4S5F8	V4VHY5	EXPERA domain-containing protein.	Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.	0.932
V4SJ37_9ROSI	V4SSF2_9ROSI	V4SJ37	V4SSF2	EXPERA domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.945
V4SJ37_9ROSI	V4VHY5_9ROSI	V4SJ37	V4VHY5	EXPERA domain-containing protein.	Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.	0.932
V4SSF2_9ROSI	V4S5F8_9ROSI	V4SSF2	V4S5F8	FAD-binding PCMH-type domain-containing protein.	EXPERA domain-containing protein.	0.945
V4SSF2_9ROSI	V4SJ37_9ROSI	V4SSF2	V4SJ37	FAD-binding PCMH-type domain-containing protein.	EXPERA domain-containing protein.	0.945
V4SSF2_9ROSI	V4T463_9ROSI	V4SSF2	V4T463	FAD-binding PCMH-type domain-containing protein.	EXPERA domain-containing protein.	0.945
V4SSF2_9ROSI	V4TB32_9ROSI	V4SSF2	V4TB32	FAD-binding PCMH-type domain-containing protein.	SQHop_cyclase_C domain-containing protein; Belongs to the terpene cyclase/mutase family.	0.440
V4SSF2_9ROSI	V4TJW5_9ROSI	V4SSF2	V4TJW5	FAD-binding PCMH-type domain-containing protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.656
V4SSF2_9ROSI	V4U0P4_9ROSI	V4SSF2	V4U0P4	FAD-binding PCMH-type domain-containing protein.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.440
V4SSF2_9ROSI	V4UCQ2_9ROSI	V4SSF2	V4UCQ2	FAD-binding PCMH-type domain-containing protein.	EXPERA domain-containing protein.	0.945
V4SSF2_9ROSI	V4UJT1_9ROSI	V4SSF2	V4UJT1	FAD-binding PCMH-type domain-containing protein.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.440
V4SSF2_9ROSI	V4VHY5_9ROSI	V4SSF2	V4VHY5	FAD-binding PCMH-type domain-containing protein.	Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.	0.950
V4SSF2_9ROSI	V4WI54_9ROSI	V4SSF2	V4WI54	FAD-binding PCMH-type domain-containing protein.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.422
V4T463_9ROSI	V4SSF2_9ROSI	V4T463	V4SSF2	EXPERA domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.945
V4T463_9ROSI	V4VHY5_9ROSI	V4T463	V4VHY5	EXPERA domain-containing protein.	Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.	0.932
V4TB32_9ROSI	V4SSF2_9ROSI	V4TB32	V4SSF2	SQHop_cyclase_C domain-containing protein; Belongs to the terpene cyclase/mutase family.	FAD-binding PCMH-type domain-containing protein.	0.440
V4TB32_9ROSI	V4TJW5_9ROSI	V4TB32	V4TJW5	SQHop_cyclase_C domain-containing protein; Belongs to the terpene cyclase/mutase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.681
V4TB32_9ROSI	V4VHY5_9ROSI	V4TB32	V4VHY5	SQHop_cyclase_C domain-containing protein; Belongs to the terpene cyclase/mutase family.	Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.	0.945
V4TJW5_9ROSI	V4SSF2_9ROSI	V4TJW5	V4SSF2	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	FAD-binding PCMH-type domain-containing protein.	0.656