STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF99488.1PFAM: Zonular occludens toxin; KEGG: rpf:Rpic12D_4473 zonular occludens toxin. (404 aa)    
Predicted Functional Partners:
AEF99487.1
Hypothetical protein.
       0.773
AEF99486.1
KEGG: rpf:Rpic12D_4471 hypothetical protein.
       0.762
AEG00734.1
PFAM: Protein of unknown function DUF2523; KEGG: pap:PSPA7_5367 bacteriophage protein.
  
    0.631
AEG02553.1
KEGG: pmy:Pmen_2111 hypothetical protein.
  
    0.631
AEF99485.1
Hypothetical protein.
       0.580
AEF99484.1
KEGG: rpf:Rpic12D_4470 hypothetical protein.
       0.419
Your Current Organism:
Methylomonas methanica
NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.