STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG00401.1PFAM: Protein of unknown function DUF159; KEGG: ava:Ava_3892 hypothetical protein; Belongs to the SOS response-associated peptidase family. (221 aa)    
Predicted Functional Partners:
AEG00400.1
DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: dar:Daro_1907 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal.
       0.782
AEG00398.1
KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; Belongs to the DNA polymerase type-Y family.
     
 0.538
AEG00399.1
PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: syn:sll5123 hypothetical protein.
       0.530
AEG00402.1
KEGG: avn:Avin_39840 hypothetical protein.
       0.499
Your Current Organism:
Methylomonas methanica
NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.