Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEG00411.1TIGRFAM: integrating conjugative element protein, PFL_4693 family; KEGG: hso:HS_1747 hypothetical protein. (258 aa)    
Predicted Functional Partners:
AEG00409.1
KEGG: noc:Noc_0628 PilL protein.
 
     0.958
AEG00412.1
PFAM: Lytic transglycosylase-like, catalytic; KEGG: noc:Noc_0630 lytic transglycosylase, catalytic.
 
     0.951
AEG00424.1
TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily; KEGG: noc:Noc_0632 hypothetical protein.
 
     0.827
AEG00434.1
TIGRFAM: integrating conjugative element protein, PFL_4703 family; KEGG: noc:Noc_0644 hypothetical protein.
 
     0.827
AEG00435.1
TIGRFAM: integrating conjugative element protein, PFL_4704 family; KEGG: noc:Noc_0645 hypothetical protein.
 
     0.827
AEG00436.1
TIGRFAM: integrating conjugative element protein, PFL_4705 family; KEGG: noc:Noc_0646 hypothetical protein.
 
     0.827
AEG00437.1
TIGRFAM: conjugative transfer region lipoprotein, TIGR03751 family; KEGG: noc:Noc_0647 hypothetical protein.
 
     0.827
AEG00438.1
TIGRFAM: conjugative transfer ATPase, PFL_4706 family; KEGG: noc:Noc_0648 hypothetical protein.
 
     0.827
AEG00442.1
TIGRFAM: integrating conjugative element protein, PFL_4711 family; KEGG: noc:Noc_0652 hypothetical protein.
 
     0.827
AEG00444.1
KEGG: noc:Noc_0653 hypothetical protein.
 
     0.827
Your Current Organism:
Methylomonas methanica
NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09
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