STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG00422.1Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: gca:Galf_2491 integrase family protein. (207 aa)    
Predicted Functional Partners:
AEG00423.1
TIGRFAM: integrating conjugative element protein, PFL_4695 family; KEGG: net:Neut_0099 hypothetical protein.
 
     0.599
AEG00424.1
TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily; KEGG: noc:Noc_0632 hypothetical protein.
 
     0.588
AEG00421.1
PFAM: Flavin reductase-like, FMN-binding; KEGG: tgr:Tgr7_1944 flavin reductase domain protein FMN-binding.
       0.504
Your Current Organism:
Methylomonas methanica
NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.