STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG00998.1KEGG: nhl:Nhal_0827 hypothetical protein. (285 aa)    
Predicted Functional Partners:
AEG01815.1
KEGG: nhl:Nhal_1728 peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; Sel1-like; SMART: Sel1-like.
 
     0.790
AEG00999.1
WD40 repeat-containing protein; PFAM: WD40 repeat, subgroup; KEGG: mac:MA2525 WD-40 repeat-containing protein.
       0.773
AEG01000.1
TIR protein; SMART: Toll-Interleukin receptor; KEGG: app:CAP2UW1_3023 hypothetical protein.
       0.773
AEG01819.1
KEGG: nhl:Nhal_0830 outer membrane autotransporter barrel domain protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain.
 
     0.743
AEG00167.1
KEGG: nhl:Nhal_0830 outer membrane autotransporter barrel domain protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain.
 
     0.740
AEF99159.1
KEGG: hch:HCH_00093 autotransporter beta-domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain.
 
     0.737
AEF98694.1
KEGG: nde:NIDE2008 putative outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain.
 
     0.728
AEG00199.1
Miro domain protein; KEGG: cte:CT1526 Rab family protein; PFAM: MIRO-like; Toll-Interleukin receptor; SMART: Ras small GTPase, Rab type; Toll-Interleukin receptor.
    
 0.688
AEG01309.1
TIR protein; SMART: Toll-Interleukin receptor; KEGG: amr:AM1_1973 leucine-rich repeat-containing protein.
    
 0.688
AEG00997.1
PFAM: Autotransporter beta-domain; KEGG: nde:NIDE2008 putative outer membrane autotransporter.
 
     0.675
Your Current Organism:
Methylomonas methanica
NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.