STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG01035.1PFAM: Protein of unknown function DUF748; KEGG: pen:PSEEN4740 hypothetical protein. (980 aa)    
Predicted Functional Partners:
AEG01036.1
Hypothetical protein.
       0.766
AEG00598.1
Protein of unknown function DUF1458; PFAM: Dodecin flavoprotein; KEGG: brh:RBRH_04236 hypothetical cytosolic protein.
  
    0.579
AEG02060.1
KEGG: noc:Noc_1094 hypothetical protein.
  
   
 0.573
AEG01034.1
KEGG: xop:PXO_00870 hypothetical protein.
       0.548
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.511
AEG01037.1
KEGG: mca:MCA1817 heat shock protein 15; PFAM: RNA-binding S4; SMART: RNA-binding S4; Belongs to the HSP15 family.
       0.509
AEG01038.1
KEGG: mca:MCA1816 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like.
       0.488
AEG00633.1
KEGG: tbd:Tbd_0243 hypothetical protein.
  
     0.468
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.434
AEG01033.1
KEGG: meh:M301_2440 hypothetical protein.
 
     0.433
Your Current Organism:
Methylomonas methanica
NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09
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