STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPC54206.1Ubp3 associated protein Bre5. (485 aa)    
Predicted Functional Partners:
KPC55090.1
Cytochrome C oxidase, mono-heme subunit/FixO.
 
  
 0.962
KPC55091.1
Hypothetical protein; Cytochrome c oxidase subunit 1 homolog, bacteroid; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.960
ccoP
Cbb3-type cytochrome c oxidase subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.947
ttrB
Tetrathionate reductase subunit B precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.817
hemN_1
Oxygen-independent coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.807
KPC55441.1
Hypothetical protein.
 
   
 0.760
KPC55086.1
FixH.
 
  
 0.736
KPC55092.1
Cytochrome oxidase maturation protein cbb3-type.
 
  
 0.691
copA_1
Putative copper-importing P-type ATPase A.
 
   
 0.681
ompW
Outer membrane protein W precursor.
 
    0.670
Your Current Organism:
Amantichitinum ursilacus
NCBI taxonomy Id: 857265
Other names: A. ursilacus, Amantichitinum ursilacus Moss et al. 2013, CIP 110167, DSM 23761, Neisseriaceae bacterium IGB-41, strain IGB-41
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