STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPC52562.1Tetratrico peptide repeat protein. (166 aa)    
Predicted Functional Partners:
alaS_1
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.809
barA_1
Signal transduction histidine-protein kinase BarA.
   
 0.809
KPC54398.1
CHASE3 domain protein.
   
 0.805
KPC50178.1
Hypothetical protein.
    
 0.805
KPC49571.1
CHASE3 domain protein.
   
 0.805
tmoS
Sensor histidine kinase TmoS.
   
 0.801
barA_2
Signal transduction histidine-protein kinase BarA.
   
 0.784
KPC54781.1
Hpt domain protein.
   
 0.783
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.777
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.774
Your Current Organism:
Amantichitinum ursilacus
NCBI taxonomy Id: 857265
Other names: A. ursilacus, Amantichitinum ursilacus Moss et al. 2013, CIP 110167, DSM 23761, Neisseriaceae bacterium IGB-41, strain IGB-41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.