Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EJD65258.1 | EJD65268.1 | HMPREF9156_00022 | HMPREF9156_00032 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Hypothetical protein. | 0.567 |
EJD65258.1 | EJD65285.1 | HMPREF9156_00022 | HMPREF9156_00049 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramyl-tripeptide synthetase; Belongs to the MurCDEF family. | 0.600 |
EJD65258.1 | ddl | HMPREF9156_00022 | HMPREF9156_01235 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.990 |
EJD65258.1 | mraY | HMPREF9156_00022 | HMPREF9156_00035 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.537 |
EJD65258.1 | murC | HMPREF9156_00022 | HMPREF9156_00039 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Hypothetical protein; Cell wall formation; Belongs to the MurCDEF family. | 0.684 |
EJD65258.1 | murD | HMPREF9156_00022 | HMPREF9156_00036 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.644 |
EJD65258.1 | murF | HMPREF9156_00022 | HMPREF9156_00034 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.985 |
EJD65258.1 | murG | HMPREF9156_00022 | HMPREF9156_00038 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Hypothetical protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.526 |
EJD65268.1 | EJD65258.1 | HMPREF9156_00032 | HMPREF9156_00022 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.567 |
EJD65268.1 | EJD65269.1 | HMPREF9156_00032 | HMPREF9156_00033 | Hypothetical protein. | Hypothetical protein. | 0.813 |
EJD65268.1 | EJD65273.1 | HMPREF9156_00032 | HMPREF9156_00037 | Hypothetical protein. | Hypothetical protein; Belongs to the SEDS family. | 0.990 |
EJD65268.1 | EJD65285.1 | HMPREF9156_00032 | HMPREF9156_00049 | Hypothetical protein. | UDP-N-acetylmuramyl-tripeptide synthetase; Belongs to the MurCDEF family. | 0.852 |
EJD65268.1 | ddl | HMPREF9156_00032 | HMPREF9156_01235 | Hypothetical protein. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.714 |
EJD65268.1 | mraY | HMPREF9156_00032 | HMPREF9156_00035 | Hypothetical protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.911 |
EJD65268.1 | murC | HMPREF9156_00032 | HMPREF9156_00039 | Hypothetical protein. | Hypothetical protein; Cell wall formation; Belongs to the MurCDEF family. | 0.884 |
EJD65268.1 | murD | HMPREF9156_00032 | HMPREF9156_00036 | Hypothetical protein. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.926 |
EJD65268.1 | murF | HMPREF9156_00032 | HMPREF9156_00034 | Hypothetical protein. | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.954 |
EJD65268.1 | murG | HMPREF9156_00032 | HMPREF9156_00038 | Hypothetical protein. | Hypothetical protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.931 |
EJD65269.1 | EJD65268.1 | HMPREF9156_00033 | HMPREF9156_00032 | Hypothetical protein. | Hypothetical protein. | 0.813 |
EJD65269.1 | EJD65273.1 | HMPREF9156_00033 | HMPREF9156_00037 | Hypothetical protein. | Hypothetical protein; Belongs to the SEDS family. | 0.714 |
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