Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EJD65503.1 | EJD65505.1 | HMPREF9156_00267 | HMPREF9156_00269 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.612 |
EJD65503.1 | EJD65506.1 | HMPREF9156_00267 | HMPREF9156_00270 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.571 |
EJD65503.1 | EJD65507.1 | HMPREF9156_00267 | HMPREF9156_00271 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.504 |
EJD65503.1 | EJD65644.1 | HMPREF9156_00267 | HMPREF9156_00408 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | 0.480 |
EJD65503.1 | alaS | HMPREF9156_00267 | HMPREF9156_00268 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.951 |
EJD65503.1 | miaA | HMPREF9156_00267 | HMPREF9156_00111 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.542 |
EJD65503.1 | mltG | HMPREF9156_00267 | HMPREF9156_00266 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.701 |
EJD65503.1 | xerC-2 | HMPREF9156_00267 | HMPREF9156_00094 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.610 |
EJD65505.1 | EJD65503.1 | HMPREF9156_00269 | HMPREF9156_00267 | Hypothetical protein. | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.612 |
EJD65505.1 | EJD65506.1 | HMPREF9156_00269 | HMPREF9156_00270 | Hypothetical protein. | Hypothetical protein. | 0.752 |
EJD65505.1 | EJD65507.1 | HMPREF9156_00269 | HMPREF9156_00271 | Hypothetical protein. | Hypothetical protein. | 0.602 |
EJD65505.1 | alaS | HMPREF9156_00269 | HMPREF9156_00268 | Hypothetical protein. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.599 |
EJD65505.1 | mltG | HMPREF9156_00269 | HMPREF9156_00266 | Hypothetical protein. | Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.542 |
EJD65506.1 | EJD65503.1 | HMPREF9156_00270 | HMPREF9156_00267 | Hypothetical protein. | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.571 |
EJD65506.1 | EJD65505.1 | HMPREF9156_00270 | HMPREF9156_00269 | Hypothetical protein. | Hypothetical protein. | 0.752 |
EJD65506.1 | EJD65507.1 | HMPREF9156_00270 | HMPREF9156_00271 | Hypothetical protein. | Hypothetical protein. | 0.651 |
EJD65506.1 | alaS | HMPREF9156_00270 | HMPREF9156_00268 | Hypothetical protein. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.558 |
EJD65506.1 | mltG | HMPREF9156_00270 | HMPREF9156_00266 | Hypothetical protein. | Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.516 |
EJD65507.1 | EJD65503.1 | HMPREF9156_00271 | HMPREF9156_00267 | Hypothetical protein. | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.504 |
EJD65507.1 | EJD65505.1 | HMPREF9156_00271 | HMPREF9156_00269 | Hypothetical protein. | Hypothetical protein. | 0.602 |
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