Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EJD64477.1 | EJD64886.1 | HMPREF9156_00972 | HMPREF9156_00761 | Hypothetical protein. | TatD family hydrolase. | 0.571 |
EJD64477.1 | rsmA | HMPREF9156_00972 | HMPREF9156_00816 | Hypothetical protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.710 |
EJD64885.1 | EJD64886.1 | HMPREF9156_00760 | HMPREF9156_00761 | Hypothetical protein. | TatD family hydrolase. | 0.507 |
EJD64886.1 | EJD64477.1 | HMPREF9156_00761 | HMPREF9156_00972 | TatD family hydrolase. | Hypothetical protein. | 0.571 |
EJD64886.1 | EJD64885.1 | HMPREF9156_00761 | HMPREF9156_00760 | TatD family hydrolase. | Hypothetical protein. | 0.507 |
EJD64886.1 | EJD64887.1 | HMPREF9156_00761 | HMPREF9156_00762 | TatD family hydrolase. | tryptophan-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.596 |
EJD64886.1 | EJD64942.1 | HMPREF9156_00761 | HMPREF9156_00817 | TatD family hydrolase. | Hypothetical protein. | 0.511 |
EJD64886.1 | der | HMPREF9156_00761 | HMPREF9156_00192 | TatD family hydrolase. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.438 |
EJD64886.1 | ftsH | HMPREF9156_00761 | HMPREF9156_00410 | TatD family hydrolase. | ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.522 |
EJD64886.1 | metG | HMPREF9156_00761 | HMPREF9156_00878 | TatD family hydrolase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.512 |
EJD64886.1 | rsmA | HMPREF9156_00761 | HMPREF9156_00816 | TatD family hydrolase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.842 |
EJD64886.1 | tmk | HMPREF9156_00761 | HMPREF9156_01187 | TatD family hydrolase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.656 |
EJD64886.1 | trmD | HMPREF9156_00761 | HMPREF9156_00982 | TatD family hydrolase. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.420 |
EJD64887.1 | EJD64886.1 | HMPREF9156_00762 | HMPREF9156_00761 | tryptophan-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | TatD family hydrolase. | 0.596 |
EJD64887.1 | metG | HMPREF9156_00762 | HMPREF9156_00878 | tryptophan-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.463 |
EJD64942.1 | EJD64886.1 | HMPREF9156_00817 | HMPREF9156_00761 | Hypothetical protein. | TatD family hydrolase. | 0.511 |
EJD64942.1 | rsmA | HMPREF9156_00817 | HMPREF9156_00816 | Hypothetical protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.931 |
der | EJD64886.1 | HMPREF9156_00192 | HMPREF9156_00761 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | TatD family hydrolase. | 0.438 |
der | ftsH | HMPREF9156_00192 | HMPREF9156_00410 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.497 |
der | rsmA | HMPREF9156_00192 | HMPREF9156_00816 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.495 |
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