Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EJD64561.1 | EJD64989.1 | HMPREF9156_01056 | HMPREF9156_00864 | Hypothetical protein. | Hypothetical protein. | 0.439 |
EJD64561.1 | ung | HMPREF9156_01056 | HMPREF9156_01055 | Hypothetical protein. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.650 |
EJD64988.1 | EJD64989.1 | HMPREF9156_00863 | HMPREF9156_00864 | Hypothetical protein; Belongs to the glycosyl hydrolase 31 family. | Hypothetical protein. | 0.445 |
EJD64989.1 | EJD64561.1 | HMPREF9156_00864 | HMPREF9156_01056 | Hypothetical protein. | Hypothetical protein. | 0.439 |
EJD64989.1 | EJD64988.1 | HMPREF9156_00864 | HMPREF9156_00863 | Hypothetical protein. | Hypothetical protein; Belongs to the glycosyl hydrolase 31 family. | 0.445 |
EJD64989.1 | EJD64990.1 | HMPREF9156_00864 | HMPREF9156_00865 | Hypothetical protein. | Hypothetical protein. | 0.556 |
EJD64989.1 | EJD65086.1 | HMPREF9156_00864 | HMPREF9156_00530 | Hypothetical protein. | nifR3 family putative TIM-barrel protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.459 |
EJD64989.1 | EJD65332.1 | HMPREF9156_00864 | HMPREF9156_00096 | Hypothetical protein. | Exodeoxyribonuclease III (xth). | 0.876 |
EJD64989.1 | EJD65541.1 | HMPREF9156_00864 | HMPREF9156_00305 | Hypothetical protein. | DNA polymerase I. | 0.601 |
EJD64989.1 | EJD65561.1 | HMPREF9156_00864 | HMPREF9156_00325 | Hypothetical protein. | HAD hydrolase, family IIB. | 0.477 |
EJD64989.1 | der | HMPREF9156_00864 | HMPREF9156_00192 | Hypothetical protein. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.525 |
EJD64989.1 | nth | HMPREF9156_00864 | HMPREF9156_00856 | Hypothetical protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.787 |
EJD64989.1 | ung | HMPREF9156_00864 | HMPREF9156_01055 | Hypothetical protein. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.665 |
EJD64990.1 | EJD64989.1 | HMPREF9156_00865 | HMPREF9156_00864 | Hypothetical protein. | Hypothetical protein. | 0.556 |
EJD65086.1 | EJD64989.1 | HMPREF9156_00530 | HMPREF9156_00864 | nifR3 family putative TIM-barrel protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Hypothetical protein. | 0.459 |
EJD65332.1 | EJD64989.1 | HMPREF9156_00096 | HMPREF9156_00864 | Exodeoxyribonuclease III (xth). | Hypothetical protein. | 0.876 |
EJD65332.1 | EJD65541.1 | HMPREF9156_00096 | HMPREF9156_00305 | Exodeoxyribonuclease III (xth). | DNA polymerase I. | 0.947 |
EJD65332.1 | nth | HMPREF9156_00096 | HMPREF9156_00856 | Exodeoxyribonuclease III (xth). | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.980 |
EJD65332.1 | ung | HMPREF9156_00096 | HMPREF9156_01055 | Exodeoxyribonuclease III (xth). | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.834 |
EJD65541.1 | EJD64989.1 | HMPREF9156_00305 | HMPREF9156_00864 | DNA polymerase I. | Hypothetical protein. | 0.601 |
page 1 of 2