EJD64777.1 protein (Scardovia wiggsiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EJD64777.1

Hypothetical protein. (147 aa)

Predicted Functional Partners:

crgA

0.773

EJD65204.1

0.755

EJD65118.1

0.699

EJD65119.1

0.634

EJD64968.1

0.596

EJD65596.1

0.576

EJD65120.1

0.571

EJD65462.1

0.552

ldh

0.536

EJD65034.1

0.532

Your Current Organism:

Scardovia wiggsiae

NCBI taxonomy Id: 857290
Other names: S. wiggsiae F0424, Scardovia wiggsiae F0424, Scardovia wiggsiae str. F0424, Scardovia wiggsiae strain F0424

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EJD64777.1	EJD64968.1	HMPREF9156_00896	HMPREF9156_00843	Hypothetical protein.	Hypothetical protein.	0.596
EJD64777.1	EJD65034.1	HMPREF9156_00896	HMPREF9156_00478	Hypothetical protein.	Hypothetical protein.	0.532
EJD64777.1	EJD65118.1	HMPREF9156_00896	HMPREF9156_00562	Hypothetical protein.	Hypothetical protein.	0.699
EJD64777.1	EJD65119.1	HMPREF9156_00896	HMPREF9156_00563	Hypothetical protein.	Hypothetical protein.	0.634
EJD64777.1	EJD65120.1	HMPREF9156_00896	HMPREF9156_00564	Hypothetical protein.	Hypothetical protein.	0.571
EJD64777.1	EJD65204.1	HMPREF9156_00896	HMPREF9156_00648	Hypothetical protein.	Hypothetical protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.755
EJD64777.1	EJD65462.1	HMPREF9156_00896	HMPREF9156_00226	Hypothetical protein.	Hypothetical protein.	0.552
EJD64777.1	EJD65596.1	HMPREF9156_00896	HMPREF9156_00360	Hypothetical protein.	Hypothetical protein.	0.576
EJD64777.1	crgA	HMPREF9156_00896	HMPREF9156_00897	Hypothetical protein.	Hypothetical protein; Involved in cell division; Belongs to the CrgA family.	0.773
EJD64777.1	ldh	HMPREF9156_00896	HMPREF9156_01091	Hypothetical protein.	L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.	0.536
EJD64968.1	EJD64777.1	HMPREF9156_00843	HMPREF9156_00896	Hypothetical protein.	Hypothetical protein.	0.596
EJD65034.1	EJD64777.1	HMPREF9156_00478	HMPREF9156_00896	Hypothetical protein.	Hypothetical protein.	0.532
EJD65034.1	EJD65118.1	HMPREF9156_00478	HMPREF9156_00562	Hypothetical protein.	Hypothetical protein.	0.491
EJD65034.1	EJD65204.1	HMPREF9156_00478	HMPREF9156_00648	Hypothetical protein.	Hypothetical protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.686
EJD65034.1	EJD65462.1	HMPREF9156_00478	HMPREF9156_00226	Hypothetical protein.	Hypothetical protein.	0.428
EJD65118.1	EJD64777.1	HMPREF9156_00562	HMPREF9156_00896	Hypothetical protein.	Hypothetical protein.	0.699
EJD65118.1	EJD65034.1	HMPREF9156_00562	HMPREF9156_00478	Hypothetical protein.	Hypothetical protein.	0.491
EJD65118.1	EJD65119.1	HMPREF9156_00562	HMPREF9156_00563	Hypothetical protein.	Hypothetical protein.	0.998
EJD65118.1	EJD65120.1	HMPREF9156_00562	HMPREF9156_00564	Hypothetical protein.	Hypothetical protein.	0.999
EJD65118.1	EJD65204.1	HMPREF9156_00562	HMPREF9156_00648	Hypothetical protein.	Hypothetical protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.994