STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJD64533.1Galactokinase; Belongs to the GHMP kinase family. GalK subfamily. (424 aa)    
Predicted Functional Partners:
EJD64532.1
Galactose-1-phosphate uridylyltransferase.
 0.999
EJD65292.1
Hypothetical protein.
 
 0.996
EJD65655.1
UDP-glucose 4-epimerase.
  
 0.983
EJD65484.1
Hypothetical protein.
  
 0.832
EJD65297.1
PTS system, glucose subfamily, IIA component.
   
  
 0.775
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
      
 0.651
EJD65420.1
Hypothetical protein.
 
 
 0.636
EJD64531.1
Hypothetical protein.
     
 0.596
EJD64774.1
Hypothetical protein.
 
  
 0.575
EJD64952.1
Mevalonate kinase.
  
   
 0.548
Your Current Organism:
Scardovia wiggsiae
NCBI taxonomy Id: 857290
Other names: S. wiggsiae F0424, Scardovia wiggsiae F0424, Scardovia wiggsiae str. F0424, Scardovia wiggsiae strain F0424
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