Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EJD64603.1 | EJD64604.1 | HMPREF9156_01098 | HMPREF9156_01099 | Hypothetical protein. | HAD hydrolase, family IIA. | 0.989 |
EJD64603.1 | EJD65522.1 | HMPREF9156_01098 | HMPREF9156_00286 | Hypothetical protein. | Hypothetical protein. | 0.948 |
EJD64603.1 | EJD65651.1 | HMPREF9156_01098 | HMPREF9156_00415 | Hypothetical protein. | Hypothetical protein. | 0.762 |
EJD64603.1 | alaS | HMPREF9156_01098 | HMPREF9156_00268 | Hypothetical protein. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.889 |
EJD64603.1 | dnaK | HMPREF9156_01098 | HMPREF9156_01137 | Hypothetical protein. | Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.862 |
EJD64603.1 | nadK | HMPREF9156_01098 | HMPREF9156_01102 | Hypothetical protein. | Hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.755 |
EJD64603.1 | rpoA | HMPREF9156_01098 | HMPREF9156_00618 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.825 |
EJD64603.1 | rpoB | HMPREF9156_01098 | HMPREF9156_00613 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.799 |
EJD64603.1 | rpoZ | HMPREF9156_01098 | HMPREF9156_00610 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.937 |
EJD64603.1 | tyrS | HMPREF9156_01098 | HMPREF9156_01097 | Hypothetical protein. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.845 |
EJD64604.1 | EJD64603.1 | HMPREF9156_01099 | HMPREF9156_01098 | HAD hydrolase, family IIA. | Hypothetical protein. | 0.989 |
EJD64604.1 | EJD65522.1 | HMPREF9156_01099 | HMPREF9156_00286 | HAD hydrolase, family IIA. | Hypothetical protein. | 0.518 |
EJD64604.1 | nadK | HMPREF9156_01099 | HMPREF9156_01102 | HAD hydrolase, family IIA. | Hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.696 |
EJD64604.1 | tyrS | HMPREF9156_01099 | HMPREF9156_01097 | HAD hydrolase, family IIA. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.869 |
EJD65522.1 | EJD64603.1 | HMPREF9156_00286 | HMPREF9156_01098 | Hypothetical protein. | Hypothetical protein. | 0.948 |
EJD65522.1 | EJD64604.1 | HMPREF9156_00286 | HMPREF9156_01099 | Hypothetical protein. | HAD hydrolase, family IIA. | 0.518 |
EJD65522.1 | dnaK | HMPREF9156_00286 | HMPREF9156_01137 | Hypothetical protein. | Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |
EJD65522.1 | rpoB | HMPREF9156_00286 | HMPREF9156_00613 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.410 |
EJD65651.1 | EJD64603.1 | HMPREF9156_00415 | HMPREF9156_01098 | Hypothetical protein. | Hypothetical protein. | 0.762 |
alaS | EJD64603.1 | HMPREF9156_00268 | HMPREF9156_01098 | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Hypothetical protein. | 0.889 |
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