STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0141Phage shock protein A. (217 aa)    
Predicted Functional Partners:
CAAU_2054
Conserved hypothetical protein.
  
 
 0.955
CAAU_0960
Hypothetical protein.
  
 
 0.953
CAAU_0140
Hypothetical protein.
       0.856
CAAU_0142
Hypothetical protein.
       0.802
CAAU_0569
ATP-binding region, ATPase-like.
    
 
 0.791
CAAU_0282
ATP-binding region, ATPase-like:Histidine kinase,HAMP region:Histidine kinase A, N-terminal.
    
 
 0.699
CAAU_1422
Two-component sensor histidine kinase.
    
 
 0.699
CAAU_2347
Sensor protein DegS.
  
    0.528
CAAU_2348
Sensor protein DegS and signal transduction histidine kinase.
  
    0.528
CAAU_0143
No significant homology. 1 putative transmembrane region was found by PSORT.
       0.438
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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