STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0206NADP-reducing hydrogenase, subunit B. (133 aa)    
Predicted Functional Partners:
CAAU_0208
Periplasmic [Fe] hydrogenase large subunit.
 
 0.995
CAAU_2435
Periplasmic [Fe] hydrogenase large subunit.
 
 0.985
CAAU_2002
Periplasmic [Fe] hydrogenase.
 
 
 0.971
CAAU_0204
NAD-reducing hydrogenase subunit HoxE.
 
 0.970
CAAU_0207
NAD-reducing hydrogenase subunit HoxF.
 
  
 0.956
CAAU_0205
Histidine kinase.
 
   
 0.931
CAAU_2432
NADH dehydrogenase (ubiquinone), 24 kDa subunit.
 
 0.901
CAAU_2003
Hypothetical protein.
 
     0.816
CAAU_2000
Hypothetical protein.
 
     0.815
CAAU_2001
Anti-sigma B factor RsbT.
 
     0.814
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.