STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0233UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (415 aa)    
Predicted Functional Partners:
CAAU_0234
UDP-N-acetylglucosamine 4,6-dehydratase.
 
 0.916
CAAU_0231
Putative WavS protein.
 
 
 0.875
CAAU_0232
Undecaprenyl-phosphate galactosephosphotransferase.
  
 0.861
CAAU_2203
Myo-inositol 2-dehydrogenase.
 
 0.796
CAAU_2206
UDP-N-acetylglucosamine 4,6-dehydratase.
 
 0.771
CAAU_0433
TPR repeat.
  
  
 0.755
CAAU_1115
Myo-inositol 2-dehydrogenase 1.
 
 
 0.744
CAAU_2200
Acetyltransferase.
  0.742
CAAU_1552
Mannose-1-phosphate guanylyltransferase / Phosphomannomutase; Unknown EC_number=2.7.7.13.
  
  
 0.719
CAAU_2196
Transferase hexapeptide repeat.
 
 
 0.714
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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