STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0336Diguanylate cyclase/phosphodiesterase. (651 aa)    
Predicted Functional Partners:
CAAU_2350
GGDEF.
 
  0.988
CAAU_0108
Hypothetical protein.
 0.987
CAAU_2082
GGDEF domain.
 
0.983
CAAU_2714
GGDEF domain protein.
 
 
0.977
CAAU_0067
GGDEF domain.
 
0.974
CAAU_0569
ATP-binding region, ATPase-like.
  
 
 0.959
CAAU_0749
EAL domain/GGDEF domain protein.
 
0.936
CAAU_0282
ATP-binding region, ATPase-like:Histidine kinase,HAMP region:Histidine kinase A, N-terminal.
  
 0.931
CAAU_1422
Two-component sensor histidine kinase.
  
 0.931
CAAU_0684
FOG: GGDEF domain.
 
0.921
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.