STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0438Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily. (330 aa)    
Predicted Functional Partners:
CAAU_0437
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
 
 0.997
CAAU_0632
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 
 0.991
CAAU_0481
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 
 0.989
CAAU_1784
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 
 0.989
CAAU_0436
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 
 0.968
CAAU_0633
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 
 0.906
CAAU_0480
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 
 0.903
CAAU_1783
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 
 0.900
CAAU_0439
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
 
 
 
0.884
CAAU_1128
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.881
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.