STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0503Hypothetical protein. (87 aa)    
Predicted Functional Partners:
CAAU_0504
Stage IV sporulation protein.
 
  
 0.995
CAAU_2517
Stage III sporulation protein AB.
  
  
 0.869
CAAU_2492
Stage II sporulation protein M (SpoIIM).
  
   
 0.834
CAAU_2515
Stage III sporulation protein AD.
  
  
 0.811
CAAU_0505
Phosphate starvation-inducible protein PhoH,predicted ATPase.
       0.808
CAAU_0506
Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog.
       0.808
ybeY
FIG000233: metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.808
CAAU_0508
Diacylglycerol kinase.
       0.808
CAAU_2470
FIGfam003972: membrane protein.
 
   
 0.803
CAAU_1285
Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.790
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.