STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0713Spore cortex-lytic enzyme, lytic transglycosylase SleB. (220 aa)    
Predicted Functional Partners:
CAAU_0875
Spore germination protein YpeB.
 
  
 0.892
CAAU_0265
Cell wall hydrolase cwlJ.
  
   
 0.706
CAAU_0288
Spore germination protein GerKC.
  
    0.641
CAAU_2322
Sporulation protein YtfJ.
  
    0.640
CAAU_0712
Fe-S OXIDOREDUCTASE (1.8.-.-).
       0.559
CAAU_2147
Stage V sporulation protein AD (SpoVAD).
  
  
 0.554
CAAU_2148
Stage V sporulation protein AC (SpoVAC).
  
  
 0.551
CAAU_1285
Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.544
CAAU_0711
DedA family; putative alkaline phosphatase-like protein.
  
    0.542
CAAU_0266
Hypothetical protein.
 
    0.536
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.