STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0871Germination protein, Ger(X)C family. (378 aa)    
Predicted Functional Partners:
CAAU_0870
Spore germination protein GerKB.
  
 0.993
CAAU_0869
Spore germination protein GerKA.
  
 0.963
CAAU_0872
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR).
 
     0.844
CAAU_0287
Spore germination protein GerKA.
  
 0.841
CAAU_0290
Spore germination protein GerKB.
 
  
 0.826
CAAU_1594
Spore germination protein.
 
  
 0.815
CAAU_0875
Spore germination protein YpeB.
 
     0.805
CAAU_1592
Spore germination protein GerAA, germination response to L-alanine and related amino acids (earliest stage).
  
 0.802
CAAU_1593
Spore germination B3 GerAC like.
  
   
 0.754
CAAU_2492
Stage II sporulation protein M (SpoIIM).
  
     0.749
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.