STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_1404Transposase. (228 aa)    
Predicted Functional Partners:
CAAU_1417
Transposase of IS1604-like element.
 
  
 0.491
CAAU_1402
Hypothetical protein.
     
 0.485
CAAU_2399
Transposase of IS1604-like element.
 
  
 0.485
CAAU_1507
Transposase of IS1604-like element.
 
  
 0.470
CAAU_1089
DNA polymerase, beta domain protein region.
  
    0.445
CAAU_2467
Ribosomal RNA small subunit methyltransferase D.
  
    0.439
CAAU_1403
Hypothetical protein.
       0.423
CAAU_1712
Transposase, IS204/IS1001/IS1096/IS1165.
 
   
 0.403
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.