STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_1638Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2). (819 aa)    
Predicted Functional Partners:
CAAU_0433
TPR repeat.
  
 
 0.918
CAAU_1693
Signal transduction histidine kinase CheA.
 
 0.908
CAAU_0437
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
 0.883
CAAU_2255
Sensor histidine kinase.
 
 
 0.879
CAAU_0436
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 0.875
CAAU_0632
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 0.869
CAAU_1784
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 0.858
CAAU_0633
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 0.856
CAAU_0481
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 0.849
CAAU_0480
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 
 0.839
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.