STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_1815Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase beta subunit. (184 aa)    
Predicted Functional Partners:
CAAU_1814
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase alpha subunit.
 
 0.999
CAAU_0110
NADP-dependent malic enzyme.
 
 
 0.980
CAAU_0091
Iron-sulfur protein.
     
 0.908
CAAU_1817
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
    
 0.886
argH
Argininosuccinate lyase.
    
 0.882
CAAU_1816
Citrate lyase gamma chain, acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
       0.846
CAAU_0562
Pyruvate-flavodoxin oxidoreductase.
     
 0.840
CAAU_1008
L-lactate dehydrogenase.
  
 
 0.803
CAAU_0086
Pyruvate formate-lyase.
   
 
 0.784
pckA
Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
 
 0.784
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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