Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CAAU_2001Anti-sigma B factor RsbT. (140 aa)    
Predicted Functional Partners:
CAAU_2002
Periplasmic [Fe] hydrogenase.
   
 0.990
CAAU_2000
Hypothetical protein.
   
 0.989
CAAU_2003
Hypothetical protein.
 
   
 0.960
CAAU_2004
Hypothetical protein.
 
     0.957
CAAU_0533
RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.872
CAAU_0793
Hypothetical protein.
  
 
 0.872
CAAU_0205
Histidine kinase.
 
  
 0.871
CAAU_2150
RNA polymerase sporulation specific sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.841
CAAU_2152
Anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.840
CAAU_0522
Flagellar motor rotation protein MotA.
   
    0.822
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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