STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_2015Hypothetical protein. (123 aa)    
Predicted Functional Partners:
CAAU_1312
Hypothetical protein.
  
     0.761
CAAU_2509
Hypothetical protein.
  
     0.755
CAAU_0960
Hypothetical protein.
  
    0.715
CAAU_2054
Conserved hypothetical protein.
  
    0.715
CAAU_0657
Conserved protein.
  
    0.694
CAAU_1800
ATP-dependent protease La LonB Type I ## sporulation.
  
     0.672
CAAU_1892
Programmed cell death antitoxin YdcD.
  
     0.669
CAAU_2548
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.633
CAAU_2231
FIG01166292: hypothetical protein.
  
     0.529
CAAU_0876
Small, acid-soluble spore proteins, alpha/be.
  
     0.522
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.