Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAAU_1285 | CAAU_1298 | CAAU_1285 | CAAU_1298 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.859 |
| CAAU_1285 | CAAU_2001 | CAAU_1285 | CAAU_2001 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Anti-sigma B factor RsbT. | 0.506 |
| CAAU_1285 | CAAU_2146 | CAAU_1285 | CAAU_2146 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Stage V sporulation protein AE (SpoVAE). | 0.674 |
| CAAU_1285 | CAAU_2147 | CAAU_1285 | CAAU_2147 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Stage V sporulation protein AD (SpoVAD). | 0.723 |
| CAAU_1285 | CAAU_2148 | CAAU_1285 | CAAU_2148 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Stage V sporulation protein AC (SpoVAC). | 0.737 |
| CAAU_1285 | CAAU_2150 | CAAU_1285 | CAAU_2150 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | RNA polymerase sporulation specific sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.752 |
| CAAU_1285 | CAAU_2152 | CAAU_1285 | CAAU_2152 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV; Belongs to the anti-sigma-factor antagonist family. | 0.834 |
| CAAU_1285 | CAAU_2494 | CAAU_1285 | CAAU_2494 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Stage 0 sporulation two-component response regulator (Spo0A); May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.825 |
| CAAU_1285 | CAAU_2495 | CAAU_1285 | CAAU_2495 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Stage IV sporulation protein B. | 0.756 |
| CAAU_1285 | spoIIAB | CAAU_1285 | CAAU_2151 | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.937 |
| CAAU_1298 | CAAU_1285 | CAAU_1298 | CAAU_1285 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.859 |
| CAAU_1298 | CAAU_2146 | CAAU_1298 | CAAU_2146 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage V sporulation protein AE (SpoVAE). | 0.775 |
| CAAU_1298 | CAAU_2147 | CAAU_1298 | CAAU_2147 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage V sporulation protein AD (SpoVAD). | 0.795 |
| CAAU_1298 | CAAU_2148 | CAAU_1298 | CAAU_2148 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage V sporulation protein AC (SpoVAC). | 0.815 |
| CAAU_1298 | CAAU_2150 | CAAU_1298 | CAAU_2150 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | RNA polymerase sporulation specific sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.758 |
| CAAU_1298 | CAAU_2152 | CAAU_1298 | CAAU_2152 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV; Belongs to the anti-sigma-factor antagonist family. | 0.794 |
| CAAU_1298 | CAAU_2494 | CAAU_1298 | CAAU_2494 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage 0 sporulation two-component response regulator (Spo0A); May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.886 |
| CAAU_1298 | CAAU_2495 | CAAU_1298 | CAAU_2495 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage IV sporulation protein B. | 0.812 |
| CAAU_1298 | spoIIAB | CAAU_1298 | CAAU_2151 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.859 |
| CAAU_2001 | CAAU_1285 | CAAU_2001 | CAAU_1285 | Anti-sigma B factor RsbT. | Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.506 |
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