STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_2247Conserved protein. (146 aa)    
Predicted Functional Partners:
CAAU_2249
[Ni/Fe] hydrogenase, group 1, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
     0.888
CAAU_2248
[Ni/Fe] hydrogenase, group 1, small subunit.
 
     0.887
CAAU_2250
Hydrogenase maturation protease delta subunit,HyaD-like.
     
 0.731
CAAU_2246
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase).
       0.651
asnA
Aspartate--ammonia ligase.
 
     0.596
CAAU_2270
Uncharacterized protein, ErfK family.
  
     0.414
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.