STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_2277ABC-type multidrug/protein/lipid transport system, ATPase component. (638 aa)    
Predicted Functional Partners:
CAAU_1545
Similar to ABC transporter (ATP-binding protein).
 
 
 
0.909
CAAU_2278
Lipid A export ATP-binding/permease protein MsbA.
 
    
0.813
CAAU_1522
ATPase component NikO of energizing module of nickel ECF transporter.
 
   
 
0.779
CAAU_2279
Transcriptional regulator, MarR family.
     
 0.740
CAAU_1183
ABC transporter, ATP-binding protein.
 
0.722
CAAU_0104
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3).
 
 
   
0.704
CAAU_0014
ABC transporter, ATP-binding protein.
   
 0.701
CAAU_0856
ABC transporter, ATP-binding protein.
   
0.701
CAAU_2032
ABC-type MDR transport system, ATPase component.
   
0.701
CAAU_0433
TPR repeat.
  
 0.664
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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