STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_2580FIG01162513: hypothetical protein. (1036 aa)    
Predicted Functional Partners:
CAAU_0433
TPR repeat.
  
 0.937
CAAU_2444
Glycosyl transferase, group 2 family protein.
     0.848
CAAU_2445
Glycosyl transferase, group 2 family protein.
     0.848
CAAU_0749
EAL domain/GGDEF domain protein.
  
 
 0.842
CAAU_2082
GGDEF domain.
  
 
 0.816
CAAU_2443
PBS lyase HEAT domain protein repeat-containing protein.
 
     0.783
CAAU_2186
Polysaccharide deacetylase.
  
 
 0.766
CAAU_2442
Two-component response regulator SA14-24.
 
 
 0.671
CAAU_2582
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
 
     0.601
CAAU_0240
Hypothetical protein.
  
 
 0.586
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.