A0A1E3PDK4 protein (Nadsonia fulvescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1E3PDK4

PRA1 family protein. (178 aa)

Predicted Functional Partners:

A0A1E3PJ46

0.760

A0A1E3PJK5

0.611

A0A1E3PMM9

0.553

A0A1E3PEZ0

0.538

A0A1E3PMM8

0.534

A0A1E3PGG7

0.524

A0A1E3PTH0

0.504

A0A1E3PGL8

0.480

A0A1E3PNE7

0.427

A0A1E3PN00

0.406

Your Current Organism:

Nadsonia fulvescens

NCBI taxonomy Id: 857566
Other names: N. fulvescens var. elongata DSM 6958, Nadsonia fulvescens var. elongata DSM 6958

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3PDK4	A0A1E3PEZ0	PRA1 family protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.538
A0A1E3PDK4	A0A1E3PGG7	PRA1 family protein.	GTP-binding protein YPTC1.	0.524
A0A1E3PDK4	A0A1E3PGL8	PRA1 family protein.	Uncharacterized protein.	0.480
A0A1E3PDK4	A0A1E3PJ46	PRA1 family protein.	Uncharacterized protein.	0.760
A0A1E3PDK4	A0A1E3PJK5	PRA1 family protein.	Uncharacterized protein.	0.611
A0A1E3PDK4	A0A1E3PMM8	PRA1 family protein.	Protein YIP.	0.534
A0A1E3PDK4	A0A1E3PMM9	PRA1 family protein.	Protein YIP.	0.553
A0A1E3PDK4	A0A1E3PN00	PRA1 family protein.	Uncharacterized protein.	0.406
A0A1E3PDK4	A0A1E3PNE7	PRA1 family protein.	Mov34-domain-containing protein; Belongs to the eIF-3 subunit F family.	0.427
A0A1E3PDK4	A0A1E3PTH0	PRA1 family protein.	Reticulon-like protein.	0.504
A0A1E3PEZ0	A0A1E3PDK4	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	PRA1 family protein.	0.538
A0A1E3PEZ0	A0A1E3PGG7	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	GTP-binding protein YPTC1.	0.621
A0A1E3PGG7	A0A1E3PDK4	GTP-binding protein YPTC1.	PRA1 family protein.	0.524
A0A1E3PGG7	A0A1E3PEZ0	GTP-binding protein YPTC1.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.621
A0A1E3PGG7	A0A1E3PJ46	GTP-binding protein YPTC1.	Uncharacterized protein.	0.612
A0A1E3PGG7	A0A1E3PMM8	GTP-binding protein YPTC1.	Protein YIP.	0.686
A0A1E3PGG7	A0A1E3PMM9	GTP-binding protein YPTC1.	Protein YIP.	0.748
A0A1E3PGL8	A0A1E3PDK4	Uncharacterized protein.	PRA1 family protein.	0.480
A0A1E3PGL8	A0A1E3PN00	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A1E3PJ46	A0A1E3PDK4	Uncharacterized protein.	PRA1 family protein.	0.760