STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
A0A1E3PMD4Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (651 aa)    
Predicted Functional Partners:
A0A1E3PPV0
Uncharacterized protein.
  
 0.999
A0A1E3PFE5
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.996
A0A1E3PN79
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
   
 0.995
A0A1E3PFS4
Putative DNA-directed RNA polymerase II subunit.
    
 0.994
A0A1E3PGW8
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.993
A0A1E3PMG7
Putative transcription initiation factor IIB.
    
 0.993
A0A1E3PML3
DNA-directed RNA polymerase II 19 kDa polypeptide.
   
 0.993
A0A1E3PRX5
Uncharacterized protein.
    
  0.992
A0A1E3PUJ8
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.990
A0A1E3PMZ2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.984
Your Current Organism:
Nadsonia fulvescens
NCBI taxonomy Id: 857566
Other names: N. fulvescens var. elongata DSM 6958, Nadsonia fulvescens var. elongata DSM 6958
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.