Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KAI94976.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
KAI93206.1
Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.634
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
     
  0.614
KAI96400.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.450
KAI94485.1
L-threonine-O-3-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.439
hisC
Histidinol-phosphate aminotransferase; Catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.439
KAI93373.1
L-threonine-O-3-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.439
KAI94981.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.417
KAI96090.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
Your Current Organism:
Rhodomicrobium udaipurense
NCBI taxonomy Id: 858455
Other names: R. udaipurense JA643, Rhodomicrobium sp. JA643, Rhodomicrobium udaipurense JA643
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