Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KAI94801.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (94 aa)    
Predicted Functional Partners:
KAI94800.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
      0.920
KAI93213.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.742
KAI94771.1
Glycogen debranching enzyme; Amylomaltase; acts to release glucose from maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
     
  0.671
KAI94794.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
KAI94795.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
KAI95920.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.471
KAI93214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.471
truA
Pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.464
KAI94793.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
KAI96267.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.404
Your Current Organism:
Rhodomicrobium udaipurense
NCBI taxonomy Id: 858455
Other names: R. udaipurense JA643, Rhodomicrobium sp. JA643, Rhodomicrobium udaipurense JA643
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