STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknASerine/threonine protein kinase. (544 aa)    
Predicted Functional Partners:
CVAR_0065
Serine/threonine protein phosphatase.
 
 
 0.985
odhI
Inhibitor of ODH activity; FOG: FHA domain.
 
 
 
 0.972
CVAR_0066
Putative secreted protein; FOG: FHA domain.
 
 
 
 0.953
CVAR_0063
Cell division protein FtsI/penicillin-binding protein 2.
  
  
 0.947
pknB1
Serine/threonine protein kinase.
 
 
0.943
rodA
Bacterial cell division membrane protein; Belongs to the SEDS family.
  
 
 0.911
CVAR_0067
Hypothetical protein; FOG: FHA domain.
 
 
 
 0.888
ftsZ
Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
     
 0.817
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
   
  
 0.778
pknL
Serine/threonine protein kinase.
 
 
0.770
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.