STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rodABacterial cell division membrane protein; Belongs to the SEDS family. (463 aa)    
Predicted Functional Partners:
CVAR_0063
Cell division protein FtsI/penicillin-binding protein 2.
 0.999
ftsI
Cell division protein FtsI/penicillin-binding protein 2.
 0.968
CVAR_0066
Putative secreted protein; FOG: FHA domain.
 
   
 0.921
pknA
Serine/threonine protein kinase.
  
 
 0.911
CVAR_0065
Serine/threonine protein phosphatase.
  
  
 0.908
pknB1
Serine/threonine protein kinase.
 
 
 0.897
pbpB1
Cell division protein FtsI/penicillin-binding protein 2.
 
 0.895
pbpB2
Cell division protein FtsI/penicillin-binding protein 2.
 0.891
ftsQ
Cell division protein; Essential cell division protein.
  
 
 0.880
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 0.856
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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