STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0066Putative secreted protein; FOG: FHA domain. (164 aa)    
Predicted Functional Partners:
pknB1
Serine/threonine protein kinase.
 
 
 
 0.999
pknL
Serine/threonine protein kinase.
 
 
 
 0.999
sucA
2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
   
 
 0.999
CVAR_0065
Serine/threonine protein phosphatase.
 
 
 0.955
pknA
Serine/threonine protein kinase.
 
 
 
 0.953
CVAR_0067
Hypothetical protein; FOG: FHA domain.
 
   
 0.946
rodA
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
   
 0.921
CVAR_0063
Cell division protein FtsI/penicillin-binding protein 2.
 
   
 0.901
odhI
Inhibitor of ODH activity; FOG: FHA domain.
  
   
 0.777
pknG
Serine/threonine protein kinase.
   
 
 0.614
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.