STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0109Predicted integral membrane protein. (191 aa)    
Predicted Functional Partners:
hmp
Nitric oxide dioxygenase; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Belongs to the globin family.
  
  
 0.869
rshA
Anti-sigma factor.
  
     0.599
CVAR_0108
Putative secreted protein.
       0.566
CVAR_0107
Hypothetical protein.
       0.512
CVAR_2063
Predicted integral membrane protein.
  
     0.495
CVAR_2214
Putative membrane protein.
  
     0.447
CVAR_1150
Hypothetical protein; Acetyltransferases.
  
     0.446
CVAR_2647
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.431
CVAR_0110
Hypothetical protein; ATPase components of ABC transporters with duplicated ATPase domains.
       0.425
CVAR_1018
Ferredoxin; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.417
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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