STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0113FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Uncharacterized NAD(FAD)-dependent dehydrogenases. (408 aa)    
Predicted Functional Partners:
CVAR_0135
ferredoxin-NAD+ reductase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
  
0.932
nirD
Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
 
 0.919
rubA
High molecular weight rubredoxin.
 
 
 0.790
rubB
High molecular weight rubredoxin.
  
 
 0.772
hmp
Nitric oxide dioxygenase; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Belongs to the globin family.
  
  
 0.613
CVAR_0114
Hypothetical protein; SAM-dependent methyltransferases.
       0.550
gltB2
Glutamate synthase domain 2.
  
  
 0.527
gltB
Glutamate synthase domain 2.
  
  
 0.527
narT
Nitrate/nitrite transporter.
  
  
 0.512
narB
Nitrate reductase; Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.473
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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