STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubAHigh molecular weight rubredoxin. (55 aa)    
Predicted Functional Partners:
alkB
Alkane 1-monooxygenase.
 
  
 0.975
CVAR_0113
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.790
rubB
High molecular weight rubredoxin.
 
     0.778
CVAR_0135
ferredoxin-NAD+ reductase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
   
 0.763
nirB
NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.758
CVAR_2721
Hypothetical protein; Fatty acid desaturase.
 
  
 0.746
CVAR_2991
Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
     0.706
CVAR_0138
Hypothetical protein.
       0.655
fadE2
Acyl-CoA dehydrogenases.
 
   
 0.647
CVAR_1691
Hypothetical protein.
  
    0.549
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.