STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0161Hypothetical protein; SAM-dependent methyltransferases. (269 aa)    
Predicted Functional Partners:
CVAR_0159
Predicted transcriptional regulator.
 
     0.752
CVAR_0160
Hypothetical protein.
       0.547
alkA
3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.
       0.534
CVAR_0163
Hypothetical protein.
       0.534
CVAR_0156
Putative membrane protein.
       0.472
CVAR_0158
Putative secreted protein.
       0.465
CVAR_0165
Putative membrane protein; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
    0.410
CVAR_0157
Hypothetical protein; ABC-type spermidine/putrescine transport systems, ATPase components.
       0.404
CVAR_0164
Hypothetical protein; ABC-type dipeptide transport system, periplasmic component.
  
    0.403
CVAR_2231
Hypothetical protein; Transcriptional regulator.
  
 
   0.403
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.