STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serDPutative short-chain type oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)    
Predicted Functional Partners:
gcvP
Glycine cleavage system protein P (pyridoxal- binding), C-terminal domain; Belongs to the GcvP family.
      0.692
CVAR_0181
Hypothetical protein.
       0.579
CVAR_2938
Hypothetical protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
    0.557
putA
NAD-dependent aldehyde dehydrogenases.
  
    0.487
CVAR_2150
Hypothetical protein; Predicted GTPase.
     
 0.433
lepB1
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.416
lepB2
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.416
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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